Motif View

Internal ID 18930195
Source Database TransTermHP TERM 62
Feature Type terminator
Name
Rho-independent transcription terminator TERM 62
Sequence GGCCACCTTCGGGTGGCC
Look for more occurrences
Start 266837
End 266854
Strand +
Genomic Context
Replicon Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AACTCTGCTGACAAA(5' tail) GGCCACC(5' stem) TTCG(loop) GGTGGCC(3' stem) TTTGTTCGTTAAGAG(3' tail). Confidence: 93. opp_overlap 266837, overlap 266833

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685