Motif View

Internal ID 18928713
Source Database TransTermHP TERM 326
Feature Type terminator
Name
Rho-independent transcription terminator TERM 326
Sequence GCCCCGAACCAGTCGGGGC
Look for more occurrences
Start 1225339
End 1225357
Strand -
Genomic Context
Replicon Pseudomonas chlororaphis subsp. aurantiaca strain JD37, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCCCTGCAAAAAAA(5' tail) GCCCCGA(5' stem) CTGGT(loop) TCGGGGC(3' stem) TTTTTTGTGCTTGCA(3' tail). Confidence: 100. opp_overlap 1225339

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685