Motif View

Internal ID 18927385
Source Database TransTermHP TERM 245
Feature Type terminator
Name
Rho-independent transcription terminator TERM 245
Sequence CGGGAGTCCCCACGGGCTCCCG
Look for more occurrences
Start 977010
End 977031
Strand -
Genomic Context
Replicon Pseudomonas brassicacearum strain PA1G7 Scaffold3, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAGGCATAAAAAAA(5' tail) CGGGAGCCC(5' stem) GTGG(loop) GGACTCCCG(3' stem) TTTTTTGACAGTTCA(3' tail). Confidence: 100. opp_overlap 977010

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685