Motif View

Internal ID 18925717
Source Database TransTermHP TERM 1269
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1269
Sequence CGGCGCAGCCCTCCCCCGCTGCGCCG
Look for more occurrences
Start 6445276
End 6445301
Strand +
Genomic Context
Replicon Pseudomonas brassicacearum strain DF41, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ATCGAGTAATAAGCC(5' tail) CGGCGCAGC(5' stem) CCTCCCCC(loop) GCTGCGCCG(3' stem) TTTTCGTTCTGAAAG(3' tail). Confidence: 95. opp_overlap 6445274 6445273

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685