Motif View

Internal ID 18923697
Source Database TransTermHP TERM 258
Feature Type terminator
Name
Rho-independent transcription terminator TERM 258
Sequence TGCCCGTTTCGTCAGAACGGGCA
Look for more occurrences
Start 1164376
End 1164398
Strand -
Genomic Context
Replicon Pseudomonas balearica DSM 6083, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTCTTAAACGAAAAA(5' tail) TGCCCGTTC(5' stem) TGACG(loop) AAACGGGCA(3' stem) TTTTTCGGACGCTGG(3' tail). Confidence: 100. opp_overlap 1164376

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685