Motif View

Internal ID 18745370
Source Database TransTermHP TERM 46
Feature Type terminator
Name
Rho-independent transcription terminator TERM 46
Sequence GACCTCGCCGAGGCATCGGCGGGGTC
Look for more occurrences
Start 137838
End 137863
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTCTTTCGGAGAAA(5' tail) GACCCCGCCGA(5' stem) TGCC(loop) TCGGCGAGGTC(3' stem) TTCGCGTCTCGACTC(3' tail). Confidence: 100. opp_overlap 137840

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685