Motif View

Internal ID 18657848
Source Database TransTermHP TERM 16
Feature Type terminator
Name
Rho-independent transcription terminator TERM 16
Sequence GGCCGCTGATACCAGCGGCC
Look for more occurrences
Start 148340
End 148359
Strand +
Genomic Context Located within gene [T648_RS00625]
Replicon Pseudomonas aeruginosa MRSN 317 contig1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGACGTCTTCTCAA(5' tail) GGCCGCTG(5' stem) ATAC(loop) CAGCGGCC(3' stem) TTTTTTTTCGGGTTG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685