Motif View

Internal ID 18656988
Source Database TransTermHP TERM 434
Feature Type terminator
Name
Rho-independent transcription terminator TERM 434
Sequence CCGGGCCTGGCGCCCGG
Look for more occurrences
Start 1953363
End 1953379
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain Carb01 63, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTTCGACACCGGAAA(5' tail) CCGGGC(5' stem) CTGGC(loop) GCCCGG(3' stem) TTTTTTCATGCCTTT(3' tail). Confidence: 100. opp_overlap 1953363

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685