Motif View

Internal ID 18650765
Source Database TransTermHP TERM 467
Feature Type terminator
Name
Rho-independent transcription terminator TERM 467
Sequence GGGCATGGAACTCCATTTCCATGCCC
Look for more occurrences
Start 1940441
End 1940466
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa DNA, complete genome, strain: NCGM 1900.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCATTCAGCCGACAA(5' tail) GGGCATGGAA(5' stem) CTCCAT(loop) TTCCATGCCC(3' stem) TTTGTTTTTATCCCG(3' tail). Confidence: 100. opp_overlap 1940441

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685