Motif View

Internal ID 18650490
Source Database TransTermHP TERM 5
Feature Type terminator
Name
Rho-independent transcription terminator TERM 5
Sequence GCCCCGCCATAGCGGGGC
Look for more occurrences
Start 6977
End 6994
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa DNA, complete genome, strain: NCGM 1900.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGTGAAAACAAGAA(5' tail) GCCCCGC(5' stem) TATG(loop) GCGGGGC(3' stem) TTCTTTTATCGAATC(3' tail). Confidence: 100. opp_overlap 6974, overlap 6974

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685