Motif View

Internal ID 18650385
Source Database TransTermHP TERM 1545
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1545
Sequence CCATGCCCCCGGCGGAACGCCGCCGGGGGCATGG
Look for more occurrences
Start 6168858
End 6168891
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa DNA, complete genome, strain: NCGM 1984.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGGCAAGAAACAGA(5' tail) CCATGCCCCCGGCGG(5' stem) CGTT(loop) CCGCCGGGGGCATGG(3' stem) GATCAGGACTGGGCG(3' tail). Confidence: 100. overlap 6168856 6168854

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685