Motif View

Internal ID 18639841
Source Database TransTermHP TERM 10
Feature Type terminator
Name
Rho-independent transcription terminator TERM 10
Sequence GGCCGCCTAGCGGCC
Look for more occurrences
Start 43738
End 43752
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGTTCTCCGGAAAA(5' tail) GGCCGC(5' stem) CTA(loop) GCGGCC(3' stem) TTTTTTGTTTTCTCC(3' tail). Confidence: 100. opp_overlap 43738, overlap 43731

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685