Motif View

Internal ID 18633859
Source Database TransTermHP TERM 76
Feature Type terminator
Name
Rho-independent transcription terminator TERM 76
Sequence CCCCGCCTCGGCGGGG
Look for more occurrences
Start 357458
End 357473
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCGCTCCACGAAAA(5' tail) CCCCGC(5' stem) CTCG(loop) GCGGGG(3' stem) TTTTTCTTTGGCCCG(3' tail). Confidence: 100. opp_overlap 357458

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685