Motif View

Internal ID 18631828
Source Database TransTermHP TERM 83
Feature Type terminator
Name
Rho-independent transcription terminator TERM 83
Sequence GGGCCGGCGCGAGGTGCGTCGGCCC
Look for more occurrences
Start 373638
End 373662
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTTTTTCCGAAAAA(5' tail) GGGCCGACGCA(5' stem) CCT(loop) CGCGCCGGCCC(3' stem) GTCGCTTCAGGCGTC(3' tail). Confidence: 100. opp_overlap 373637

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685