Motif View

Internal ID 18615035
Source Database TransTermHP TERM 9
Feature Type terminator
Name
Rho-independent transcription terminator TERM 9
Sequence CACCGACGGCCCGCTTGCGGGCCGTCGGCG
Look for more occurrences
Start 50122
End 50151
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGCCGCCCCGGAAA(5' tail) CGCCGACGGCCCG(5' stem) CAAG(loop) CGGGCCGTCGGTG(3' stem) CTACAGCGCTGCGGA(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685