Motif View

Internal ID 18611871
Source Database TransTermHP TERM 103
Feature Type terminator
Name
Rho-independent transcription terminator TERM 103
Sequence GGCCGGCGAATGCCGGCC
Look for more occurrences
Start 265142
End 265159
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGATCCACGAAAAA(5' tail) GGCCGGC(5' stem) GAAT(loop) GCCGGCC(3' stem) TTTTTCATTCTCGCC(3' tail). Confidence: 100. opp_overlap 265142, overlap 265136 265135

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685