Motif View

Internal ID 18609719
Source Database TransTermHP TERM 164
Feature Type terminator
Name
Rho-independent transcription terminator TERM 164
Sequence GGGCGCGGTCCGCCGCCGGGCCGCGCCG
Look for more occurrences
Start 626161
End 626188
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain Liverpool Epidemic Strain, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGGACGGGGGGAAA(5' tail) CGGCGCGGCCCG(5' stem) GCGG(loop) CGGACCGCGCCC(3' stem) TCGGCTTCAGCGGTA(3' tail). Confidence: 91. overlap 626162

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685