Motif View

Internal ID 18608191
Source Database TransTermHP TERM 3
Feature Type terminator
Name
Rho-independent transcription terminator TERM 3
Sequence GGCCGGGGAGCGCTGCTCACCGGCC
Look for more occurrences
Start 11673
End 11697
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa WS136, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGTCGACGAAAAAAA(5' tail) GGCCGGTGAGC(5' stem) AGC(loop) GCTCCCCGGCC(3' stem) TTTTTCGTTACGAGG(3' tail). Confidence: 100. opp_overlap 11673

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685