Motif View

Internal ID 18593924
Source Database TransTermHP TERM 24
Feature Type terminator
Name
Rho-independent transcription terminator TERM 24
Sequence CAGGGCCCTCGGGCCCTG
Look for more occurrences
Start 53615
End 53632
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14379 AZPAE14379_contig_14, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGCGGAAACGAAAA(5' tail) CAGGGCC(5' stem) CGAG(loop) GGCCCTG(3' stem) TTTTCATCGATCACG(3' tail). Confidence: 100. opp_overlap 53615, overlap 53610 53609

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685