Motif View

Internal ID 18562465
Source Database TransTermHP TERM 144
Feature Type terminator
Name
Rho-independent transcription terminator TERM 144
Sequence GCCGCCTTCGGGCGGC
Look for more occurrences
Start 417095
End 417110
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14980 AZPAE14980_contig_9, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCGCTACGGAACAA(5' tail) GCCGCC(5' stem) TTCG(loop) GGCGGC(3' stem) TTTTTCATTTGTGGA(3' tail). Confidence: 100. opp_overlap 417095, overlap 417089

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685