Motif View

Internal ID 18562115
Source Database TransTermHP TERM 12
Feature Type terminator
Name
Rho-independent transcription terminator TERM 12
Sequence AAGCCCGCCTTCAGGCGGGCTC
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Start 78603
End 78624
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14980 AZPAE14980_contig_38, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTGTACAGAAACAAA(5' tail) GAGCCCGCC(5' stem) TGAA(loop) GGCGGGCTT(3' stem) TGAACGGAACGGACC(3' tail). Confidence: 93. opp_overlap 78605, overlap 78605

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685