Motif View

Internal ID 18561808
Source Database TransTermHP TERM 24
Feature Type terminator
Name
Rho-independent transcription terminator TERM 24
Sequence TAGGGCCCTCGGGCCCTG
Look for more occurrences
Start 53870
End 53887
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14980 AZPAE14980_contig_19, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGCGGAAACGAAAA(5' tail) CAGGGCC(5' stem) CGAG(loop) GGCCCTA(3' stem) TTTTCATCGATCACG(3' tail). Confidence: 91. opp_overlap 53870 53872, overlap 53865 53864 53872

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685