Motif View

Internal ID 18544550
Source Database TransTermHP TERM 4
Feature Type terminator
Name
Rho-independent transcription terminator TERM 4
Sequence TGGGGCGGAGCAGGGAGGCATCCGCCCCA
Look for more occurrences
Start 81327
End 81355
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14840 AZPAE14840_contig_36, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCCTGGGCATGAAAA(5' tail) TGGGGCGGATGC(5' stem) CTCCCT(loop) GC-TCCGCCCCA(3' stem) TTCACTTCACTGCGC(3' tail). Confidence: 95. gap 1, opp_overlap 81327

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685