Motif View

Internal ID 18535254
Source Database TransTermHP TERM 868
Feature Type terminator
Name
Rho-independent transcription terminator TERM 868
Sequence GGGCGGCCTAGGCCGCCC
Look for more occurrences
Start 3608679
End 3608696
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain PSE305.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGGGAAAACGAAAAA(5' tail) GGGCGGC(5' stem) CTAG(loop) GCCGCCC(3' stem) TTTTTCATGATGGAT(3' tail). Confidence: 100. opp_overlap 3608679, overlap 3608673 3608672

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685