Motif View

Internal ID 18531909
Source Database TransTermHP TERM 499
Feature Type terminator
Name
Rho-independent transcription terminator TERM 499
Sequence GGCCGCCGGCGGGCAACCGCTGGCGGCC
Look for more occurrences
Start 2053679
End 2053706
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PA96.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCATTCATGCAAAA(5' tail) GGCCGCCGGCGG(5' stem) GCAA(loop) CCGCTGGCGGCC(3' stem) TTTTTTTCGTACTGC(3' tail). Confidence: 100. opp_overlap 2053679

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685