Motif View

Internal ID 18530420
Source Database TransTermHP TERM 1268
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1268
Sequence CGAGGCCCGCCCAGTTGCGGGCCTCG
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Start 5234429
End 5234454
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa YL84, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCTCCCCCCAAAAA(5' tail) CGAGGCCCGC(5' stem) AACTGG(loop) GCGGGCCTCG(3' stem) TCATCGACTGTGGGA(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685