Motif View

Internal ID 18530169
Source Database TransTermHP TERM 871
Feature Type terminator
Name
Rho-independent transcription terminator TERM 871
Sequence CCGGCCCCACTGGGCCGG
Look for more occurrences
Start 3501252
End 3501269
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa YL84, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GAAGGAAACGCAAAA(5' tail) CCGGCCC(5' stem) AGTG(loop) GGGCCGG(3' stem) TTCTTTCGCCAGCGG(3' tail). Confidence: 100. opp_overlap 3501252

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685