Motif View

Internal ID 18529540
Source Database TransTermHP TERM 69
Feature Type terminator
Name
Rho-independent transcription terminator TERM 69
Sequence GGGGGCGCCGCATGGCGCCCCC
Look for more occurrences
Start 237449
End 237470
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA037 adkgb-supercont1.8, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAAGCGGAAAGTATA(5' tail) GGGGGCGCC(5' stem) ATGC(loop) GGCGCCCCC(3' stem) GTTGTCATTTACGCT(3' tail). Confidence: 91. opp_overlap 237449 237448 237443, overlap 237444

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685