Motif View

Internal ID 18529504
Source Database TransTermHP TERM 23
Feature Type terminator
Name
Rho-independent transcription terminator TERM 23
Sequence GCCCGGCATTCGCCGGGC
Look for more occurrences
Start 103412
End 103429
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA037 adkgb-supercont1.8, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGAACCACGAAAAA(5' tail) GCCCGGC(5' stem) ATTC(loop) GCCGGGC(3' stem) TTTTTCGTTTTAATC(3' tail). Confidence: 100. opp_overlap 103412 103405 103402, overlap 103405

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685