Motif View

Internal ID 18509747
Source Database TransTermHP TERM 32
Feature Type terminator
Name
Rho-independent transcription terminator TERM 32
Sequence CCCCGGCTTTCGCCGGGG
Look for more occurrences
Start 143404
End 143421
Strand -
Genomic Context
Replicon Pseudomonas syringae strain B576 contig_29, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTGATCGAACACCAA(5' tail) CCCCGGC(5' stem) GAAA(loop) GCCGGGG(3' stem) TTTTTGTTTGTGGAG(3' tail). Confidence: 95. opp_overlap 143404

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685