Motif View

Internal ID 18509417
Source Database TransTermHP TERM 232
Feature Type terminator
Name
Rho-independent transcription terminator TERM 232
Sequence GCCGACCCGGTAACGGGTCGGC
Look for more occurrences
Start 1390057
End 1390078
Strand +
Genomic Context
Replicon Pseudomonas syringae strain B576 contig_11, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGGGATTATTGAAA(5' tail) GCCGACCCG(5' stem) GTAA(loop) CGGGTCGGC(3' stem) TTTTTTTTGCCTGTT(3' tail). Confidence: 100. opp_overlap 1390057

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685