Motif View

Internal ID 18508474
Source Database TransTermHP TERM 1364
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1364
Sequence GCGGCCGGCGCCCGGTCGGCGCCGGTCGC
Look for more occurrences
Start 5533846
End 5533874
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO581 genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGTCGACGGGAAAC(5' tail) GCGACCGGCGCC(5' stem) GACCG(loop) GGCGCCGGCCGC(3' stem) CGTTTCAGAAGTCCA(3' tail). Confidence: 91. opp_overlap 5533845 5533845, overlap 5533845

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685