Motif View

Internal ID 18507029
Source Database TransTermHP TERM 644
Feature Type terminator
Name
Rho-independent transcription terminator TERM 644
Sequence GGGCCGGCGCGAGGTGCGTCGGCCC
Look for more occurrences
Start 3011029
End 3011053
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa c7447m genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTTTTTCCGAAAAA(5' tail) GGGCCGACGCA(5' stem) CCT(loop) CGCGCCGGCCC(3' stem) GTCGCTTCAGGCGTC(3' tail). Confidence: 100. opp_overlap 3011028

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685