Motif View

Internal ID 18506145
Source Database TransTermHP TERM 810
Feature Type terminator
Name
Rho-independent transcription terminator TERM 810
Sequence GGGCGGCCTAGGCCGCCC
Look for more occurrences
Start 3548065
End 3548082
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1-VE2 genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGGGAAAACGAAAAA(5' tail) GGGCGGC(5' stem) CTAG(loop) GCCGCCC(3' stem) TTTTTCATGATGGAT(3' tail). Confidence: 100. opp_overlap 3548065, overlap 3548059 3548058

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685