Motif View

Internal ID 18505977
Source Database TransTermHP TERM 546
Feature Type terminator
Name
Rho-independent transcription terminator TERM 546
Sequence CATGGCGTTACGCTATCG
Look for more occurrences
Start 2423837
End 2423854
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1-VE2 genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAAGGAAATAAAAAA(5' tail) CGATAGCG(5' stem) TAA(loop) CGCCAT-G(3' stem) ATCCGCAGGGCTTCC(3' tail). Confidence: 95. gap 1, overlap 2423838 2423840 2423842

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685