Motif View

Internal ID 18504332
Source Database TransTermHP TERM 1346
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1346
Sequence GCCTCCGTAAAAGGAGGC
Look for more occurrences
Start 5458453
End 5458470
Strand -
Genomic Context
Replicon Pseudomonas chlororaphis strain PA23, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTTTAGTAACAAAAA(5' tail) GCCTCC(5' stem) TTTTAC(loop) GGAGGC(3' stem) TTTTTTGTTACACCG(3' tail). Confidence: 90. opp_overlap 5458453, overlap 5458447

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685