Motif View

Internal ID 18504200
Source Database TransTermHP TERM 1161
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1161
Sequence GCCGACCCATTTATTGGGTCGGC
Look for more occurrences
Start 4809115
End 4809137
Strand +
Genomic Context
Replicon Pseudomonas chlororaphis strain PA23, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGGATTGTTATCGA(5' tail) GCCGACCCA(5' stem) TTTAT(loop) TGGGTCGGC(3' stem) TTTTTTATTGCCCGG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685