Motif View

Internal ID 18503438
Source Database TransTermHP TERM 17
Feature Type terminator
Name
Rho-independent transcription terminator TERM 17
Sequence CCCGCTTCGGCGGG
Look for more occurrences
Start 112717
End 112730
Strand +
Genomic Context
Replicon Pseudomonas chlororaphis strain PA23, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGATCGACAAAAAGA(5' tail) CCCGC(5' stem) TTCG(loop) GCGGG(3' stem) TTTTTTTGTGCCGAT(3' tail). Confidence: 100. opp_overlap 112715 112717

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685