Motif View

Internal ID 18499896
Source Database TransTermHP TERM 788
Feature Type terminator
Name
Rho-independent transcription terminator TERM 788
Sequence GGGTTCCGGCGCCAGCCGGAACCC
Look for more occurrences
Start 3304091
End 3304114
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa VRFPA04, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTGTCGGATGGAAAA(5' tail) GGGTTCCGGC(5' stem) TGGC(loop) GCCGGAACCC(3' stem) CTGGGCCAGGATCAG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685