Motif View

Internal ID 18498765
Source Database TransTermHP TERM 266
Feature Type terminator
Name
Rho-independent transcription terminator TERM 266
Sequence CGCCCCTCGGGGCG
Look for more occurrences
Start 1230030
End 1230043
Strand +
Genomic Context
Replicon Pseudomonas putida S12, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGCTAACGAAAAAA(5' tail) CGCCC(5' stem) CTCG(loop) GGGCG(3' stem) TTTTTTTGTGCCTGG(3' tail). Confidence: 100. opp_overlap 1230030, overlap 1230011

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685