Motif View

Internal ID 18498754
Source Database TransTermHP TERM 252
Feature Type terminator
Name
Rho-independent transcription terminator TERM 252
Sequence GCCGCTGCCGATCAGCGGC
Look for more occurrences
Start 1179223
End 1179241
Strand +
Genomic Context
Replicon Pseudomonas putida S12, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGTTAGCCTTTTAAA(5' tail) GCCGCTG(5' stem) CCGAT(loop) CAGCGGC(3' stem) TTTTTTTATGTGCTT(3' tail). Confidence: 100. opp_overlap 1179223

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685