Motif View

Internal ID 18498695
Source Database TransTermHP TERM 165
Feature Type terminator
Name
Rho-independent transcription terminator TERM 165
Sequence TGCCGTGCGGGGTGCCTACGGGTGCCCCGCGCGGCA
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Start 749044
End 749079
Strand +
Genomic Context
Replicon Pseudomonas putida S12, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCAGTAAGGCCTGAA(5' tail) TGCCGTGCGGGGTGCC(5' stem) TACG(loop) GGTGCCCCGCGCGGCA(3' stem) TTTTTGTATCCGCGC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685