Motif View

Internal ID 18478619
Source Database TransTermHP TERM 26
Feature Type terminator
Name
Rho-independent transcription terminator TERM 26
Sequence GGCGCGGTCCGCCGTCGGGCCGCGCC
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Start 123549
End 123574
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14842 AZPAE14842_contig_20, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGGACGGGGGGAAAC(5' tail) GGCGCGGCCCG(5' stem) ACGG(loop) CGGACCGCGCC(3' stem) CTCGGCTTCAGCGGT(3' tail). Confidence: 90. overlap 123548

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685