Motif View

Internal ID 18471274
Source Database TransTermHP TERM 162
Feature Type terminator
Name
Rho-independent transcription terminator TERM 162
Sequence GCCCCGCAGATGCGGGGC
Look for more occurrences
Start 403636
End 403653
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14847 AZPAE14847_contig_11, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGTTCGCATAAAAAA(5' tail) GCCCCGC(5' stem) ATCT(loop) GCGGGGC(3' stem) TCTACGATCAACGTC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685