Motif View

Internal ID 18471273
Source Database TransTermHP TERM 161
Feature Type terminator
Name
Rho-independent transcription terminator TERM 161
Sequence GGGGTTAGCGCAAGCTAACCCC
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Start 403533
End 403554
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14847 AZPAE14847_contig_11, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CACCATATTTTTCAA(5' tail) GGGGTTAGC(5' stem) GCAA(loop) GCTAACCCC(3' stem) TTTTTGTTTTGGTCG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685