Motif View

Internal ID 18436534
Source Database TransTermHP TERM 2
Feature Type terminator
Name
Rho-independent transcription terminator TERM 2
Sequence CGGCGCCGGCAACCCCGGCGCCG
Look for more occurrences
Start 5762
End 5784
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14882 AZPAE14882_contig_35, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCCCACGACCCAGA(5' tail) CGGCGCCGG(5' stem) CAACC(loop) CCGGCGCCG(3' stem) TTTTATTTTGTGCAA(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685