Motif View

Internal ID 18436310
Source Database TransTermHP TERM 18
Feature Type terminator
Name
Rho-independent transcription terminator TERM 18
Sequence GAAGGGGCTGCACGCCCCTTC
Look for more occurrences
Start 75201
End 75221
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14882 AZPAE14882_contig_23, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCCTGCTCGGCAAAA(5' tail) GAAGGGGC(5' stem) GTGCA(loop) GCCCCTTC(3' stem) CTTCCCATGGATCAC(3' tail). Confidence: 91. opp_overlap 75204, overlap 75204

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685