Motif View

Internal ID 18433726
Source Database TransTermHP TERM 18
Feature Type terminator
Name
Rho-independent transcription terminator TERM 18
Sequence GAATGACTGGAAACAGGCATTC
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Start 65887
End 65908
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14884 AZPAE14884_contig_5, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGTGCACGTAACGC(5' tail) GAATGACTG(5' stem) GAAA(loop) CAGGCATTC(3' stem) TTTTTGTCAGATCGC(3' tail). Confidence: 90.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685