Motif View

Internal ID 18433610
Source Database TransTermHP TERM 20
Feature Type terminator
Name
Rho-independent transcription terminator TERM 20
Sequence CCGCCACGGCGCGCTCCGGCGCGCCATGGCGG
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Start 44816
End 44847
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14884 AZPAE14884_contig_24, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACGCTAATGGAGGAA(5' tail) CCGCCATGGCGCGC(5' stem) CGGA(loop) GCGCGCCGTGGCGG(3' stem) GCGGATCAGTGACGC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685