Motif View

Internal ID 18433361
Source Database TransTermHP TERM 36
Feature Type terminator
Name
Rho-independent transcription terminator TERM 36
Sequence CCGGTCCCTCGGGGCCGG
Look for more occurrences
Start 134772
End 134789
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14884 AZPAE14884_contig_15, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAGGCATAAAAAAA(5' tail) CCGGCCC(5' stem) CGAG(loop) GGACCGG(3' stem) TTTTCAACAGGTCGT(3' tail). Confidence: 100. opp_overlap 134772, overlap 134730

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685